Expression quantitative trait loci (eQTLs) are regions of the genome containing DNA sequence variants that influence the expression level of one or more genes. PancanQTL aims to comprehensively provide cis-eQTLs (SNPs affect local gene expression) and trans-eQTLs (SNPs affect distant gene expression) in 33 cancer types from The Cancer Genome Atlas (TCGA).
In PancanQTL, users can:
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Browse or search cis-eQTLs and trans-eQTLs across different cancer types;
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Browse or search eQTLs associated with patient overall survival across different cancer types;
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Browse or search eQTLs in GWAS linkage disequilibrium (LD) regions;
Citation:
Jing Gong, Shufang Mei, Chunjie Liu, Yu Xiang, Youqiong Ye, Zhao Zhang, Jing Feng, Renyan Liu, Lixia Diao, An-Yuan Guo, Xiaoping Miao* and Leng Han*. Nucleic Acids Research.(2018)
Cis-eQTLs
Trans-eQTLs
Survival-eQTLs
