Welcome to the lncRNASNP database.

Long non-coding RNAs (lncRNAs) are a class of non-protein coding RNAs >200 nt in length, which are emerging as key factors in the regulation of various cellular processes. LncRNASNP is a database providing comprehensive resources of single nucleotide polymorphisms (SNPs) in human/mouse lncRNAs. It contains SNPs in lncRNAs, SNP effects on lncRNA structure and lncRNA:miRNA binding. LncRNASNP also integrates GWAS data and miRNA expression data into functional SNP selection for genetic association studies.

lncRNASNP: a database of SNPs in lncRNAs and their potential functions in human and mouse.
Jing Gong, Wei Liu, Jiayou Zhang, Xiaoping Miao* and An-Yuan Guo*
. Nucl. Acids Res. (28 January 2015) 43 (D1): D181-D186.
lncRNASNP2: an updated database of functional SNPs and mutations in human and mouse lncRNAs.
Ya-Ru Miao, Wei Liu, Qiong Zhang, An-Yuan Guo
. Nucl. Acids Res. 2017.
lncRNA & SNP & miRNA
Input a SNP ID such as `rs10965215`
Input a lncRNA ID such as `lnc-ABCD3-2:2`
Input a miRNA ID such as `hsa-miR-522-3p`
Query if the miRNA targets the lncRNA.
Select a tagSNP ID such as `rs564398`
Input GWAS or user-defined LD regions such as `chr9:22017550-22054356`
Batch search
One ID for each line