SEGtools analysis report

report time :2016-03-01 17:38:19

Summary of SEGtools analysis result

Table 1: The survey for the analysis result

total_genes	total_samples	total_SEGs	samples_have_SEG	high_SEGs	low_SEGs	overlap_high_low_SEGs
60433	38	3380	38	3254	110	16

SEGs in samples

Table 2: Number of genes detected as SEGs in different number of samples

SEG_in_samples	1	2	3	4	5	6	7	8	13	18
Gene_number	2050	905	259	84	50	19	9	2	1	1

Figure 1: Genes detected as SEG in the different number of samples

Figure 2: Genes detected as SEG in each samples, click the bar graph to see more detail about SEGs in that sample

SEGs Heatmap profile(TOP 50)

Profiles; green means the gene is low SEG in this sample,red represents high SEG

Figure 3: This heatmap shows the SEGs(50 numbers,x axis) which having the similar expression pattern in samples(y axis), the colors correspond to the SEG level; red menas high SEG, white means the gene has no special expression pattern in the corresponse sample and the blue represense the low SEG pattern. The color bar on the right indicate the SEG levels.

PCA figure of samples with SEG profiles

Figure 4: This PCA figure shows some kind of relationship between samples, The distance of samples shows the simility of samples.

A few SEGs table result(top 20)

SEG_name	H_SEG_sample	H_SEG_sample_number	L_SEG_sample	L_SEG_sample_number	Total_SEG_sample_number	pnglink
ENSG00000175535	pancreas	1	-	0	1	Expression Figure
ENSG00000204983	pancreas	1	-	0	1	Expression Figure
ENSG00000198804	heart	1	-	0	1	Expression Figure
ENSG00000275896	pancreas	1	-	0	1	Expression Figure
ENSG00000171201	salivary.gland	1	-	0	1	Expression Figure
ENSG00000142789	pancreas	1	-	0	1	Expression Figure
ENSG00000134551	salivary.gland	1	-	0	1	Expression Figure
ENSG00000137392	pancreas	1	-	0	1	Expression Figure
ENSG00000198886	heart	1	-	0	1	Expression Figure
ENSG00000163631	liver	1	-	0	1	Expression Figure
ENSG00000091704	pancreas	1	-	0	1	Expression Figure
ENSG00000126549	salivary.gland	1	-	0	1	Expression Figure
ENSG00000205649	salivary.gland	1	-	0	1	Expression Figure
ENSG00000198727	heart	1	-	0	1	Expression Figure
ENSG00000244734	bone.marrow	1	-	0	1	Expression Figure
ENSG00000168925	pancreas	1	-	0	1	Expression Figure
ENSG00000170835	pancreas	1	-	0	1	Expression Figure
ENSG00000143632	skeletal.muscle	1	-	0	1	Expression Figure
ENSG00000170890	pancreas	1	-	0	1	Expression Figure
ENSG00000142615	pancreas	1	-	0	1	Expression Figure

Table 3: part of detected SEGs : The number of samples in which corresponce SEG is specially expressed(up, down and all),detail information please click the hyperlinks at the end of each line

All SEGs detail link The corresponding SEGs expression file is: SEG_sample_detail.xls
Each SEGs expression figure is at: SEGtool_result/single_gene_result
Each sample's SEGs information is at: SEGtool_result/single_sample_result
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